Perform analysis from any data input source.
Start either from FastQ, SAM, or BAM files.
All data in a single file
Introducing the RC file format.
All the relevant information of FASTA and BAM files, stored in a single file.
Easy and flexible data analysis
Process data derived from any high-throughput RNA structure probing (SHAPE/DMS-seq, SHAPE/DMS-MaP, etc.) or RNA post-transcriptional modifications mapping experiment.
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Ψ-seq and 2OMe-seq
Straightforward analysis of transcriptome-wide single-base resolution mapping of Ψ and 2'-O-Me residues.
m6A-seq and m1A-seq
Fast and reliable analysis of immunoprecipitation-based RNA modifications mapping experiments.